PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000119446
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 378aa    MW: 42949.9 Da    PI: 5.4439
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000119446genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.65e-5361331128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                    lppGfrFhPtdeelv +yL++kveg ++el evi+ +d+yk++Pw+Lp k  +  ++ ew+fF++rd+ky++g+r+nratk+gyWkatgkd++v++
  MDP0000119446   6 LPPGFRFHPTDEELVGYYLHRKVEGLEFEL-EVIPVIDLYKFDPWELPeKsFLPRRDMEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKVVC 100
                    79****************************.99**************95334455788************************************** PP

            NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++ + g +ktLvfy+grap g +tdW+mheyrl
  MDP0000119446 101 -QSGVXGYRKTLVFYRGRAPLGDRTDWIMHEYRL 133
                    .8889***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.03E-604156IPR003441NAC domain
PROSITE profilePS5100557.8746156IPR003441NAC domain
PfamPF023655.1E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MGGASLPPGF RFHPTDEELV GYYLHRKVEG LEFELEVIPV IDLYKFDPWE LPEKSFLPRR  60
DMEWFFFCPR DRKYPNGSRT NRATKAGYWK ATGKDRKVVC QSGVXGYRKT LVFYRGRAPL  120
GDRTDWIMHE YRLNDDLAQG TSGHQGVFAL CRVVKKNEHA HKTHDSHGEP KAKRVGSASS  180
SGEDMTSTRI LKEPLSISAD TSSQASYLHX ESRYSSRATS PHEVNXMAEF EPASRETNPA  240
DFWVSPDLIL DSSKLSQTCX LQDYPQLQKA MPNYFQQYEF PSTMSPWQSY EPRESPSSSY  300
SNFTGDLKMA DDVNQMGGMS PFSGHTDYMG YYGNEEMQFE GSETWDGQAL ICRQVSADGS  360
LGELGGLWLQ EDNMVIVM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-54516216171NO APICAL MERISTEM PROTEIN
1ut4_B1e-54516216171NO APICAL MERISTEM PROTEIN
1ut7_A1e-54516216171NO APICAL MERISTEM PROTEIN
1ut7_B1e-54516216171NO APICAL MERISTEM PROTEIN
4dul_A1e-54516216171NAC domain-containing protein 19
4dul_B1e-54516216171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008373551.10.0PREDICTED: protein ATAF2-like
TrEMBLM5WMJ80.0M5WMJ8_PRUPE; Uncharacterized protein
STRINGPOPTR_0001s02710.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67223450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.11e-104NAC domain containing protein 71